Resources
DeconV
A probabilistic framework for cell type deconvolution that uses scRNA-seq data as a reference to estimate cell type proportions in bulk RNA-seq.
GitHub ↗OOB
An omics analysis toolbox. File utilities, normalisation for RNA and scRNA-seq, PCA, UMAP, TRIMAP and Leiden clustering, and Gene Set Differential Activation.
GitHub ↗PAC
The Personalised ASE Caller. An allele-specific expression pipeline combining diploid genome mapping with features that improve accuracy in single-sample analyses. Built with Alan Hodgkinson, King's College London.
GitHub ↗